ibidi 50201 Collagen Type I 5 mg/ml Rat Tail Instructions
- June 12, 2024
- ibidi
Table of Contents
ibidi 50201 Collagen Type I 5 mgml Rat Tail
Introduction
Type I Collagen is a major structural component of the extracellular matrix (ECM). Therefore, this fibrous protein is often used in three-dimensional (3D) collagen gels that simulate the in vivo cell environment better than the traditional 2D systems. Additionally, Collagen I is ideal for coating surfaces, as it can form thin layers for culturing cells. ibidi’s Type I Collagen is a state-of-the-art, purified protein extracted from rat tail tendons without pepsinization. It is intended to be used in cell-based assays, like 3D gels or coating of lab cultureware
Please read the following Application Note for specific gel protocols using DMEM and RPMI 1640: Application Note 26: ”Preparation of Collagen I Gels”
Overview
This document is applicable to the following product numbers:
| Cat. No. | Product Name |
|---|---|
| 50201 | Collagen Type I, rat tail, 5 mg/ml, 1 × 5 ml: non–pepsinized |
| 50202 | Collagen Type I, rat tail, 5 mg/ml, 4 × 5 ml: non–pepsinized |
| 50203 | Collagen Type I, rat tail, 5 mg/ml, 1 × 100 ml: non–pepsinized |
Specifications
Collagen Type I, rat tail
Source| Rat tail tendon
Appearance| Optically clear viscous liquid
Extraction| Acid, non-pepsinized
Purity| > 90 % by SDS PAGE
Sterility| Sterile, for cell culture
Contaminants| Negative for DNA, bacteria, fungi, and mycoplasma
Growth factors| None
Formulation| Supplied in 17.5 mM acetic acid (∼ 0.1%)
pH| 3.4–4.2
Degradation| Collagenase NB 4 (Standard Grade) from C. histolyticum (Serva,
Cat-No. 17454.02)
Antibody staining| Antibody for rat skin, e.g. BIOLOGO, Cat-No. CO20141-0.1
Material
Collagen is a fibrous protein that consists of three α-chains. They combine to create a rope-like triple helix, thus providing tensile strength to the extracellular matrix (ECM). The triple helices aggregate and form fibrils in a self organized manner. In vivo, the fibrils aggregate into fibers to form tissue such as tendon or dermis.
Unlike pepsin-extracted collagen, the ibidi Collagen Type I is acid-extracted. This, and the very mild manufacturing process, preserve a maximal nativity
Shipping and Storage
| Shipping conditions | Ambient temperature * |
|---|---|
| Storage conditions | –20°C |
| Shelf life | Under proper storage conditions as indicated on vial |
*Shipped with additional ice pack to assure temperature below 25°C.
Applications
At a neutral pH, Type I Collagen will form a 3D gel, similar to the animal extracellular matrix. 3D gels allow to study the effects of the mechanical properties of the ECM on cell development, as well as chemotaxis, migration, and morphology. Unlike 2D systems, 3D environments allow cell extensions to simultaneously utilize integrins all over the cell membrane. This results in the activation of specific signaling pathways. Gel stiffness, or rigidity, affects cell migration differently in 3D than in 2D environments. Furthermore, integrin-independent mechanical interactions, resulting from the entanglement of matrix fibrils with cell extensions, are possible in 3D systems, but not in 2D systems where the cells are attached to a flat surface.
Additionally, Collagen I is ideal for the thin coating of surfaces in 2D environments. It promotes cell adhesion for numerous cell types in a 2D culture.
Both the 2D and 3D applications include the study of tumor cell invasion, migration, and the chemotaxis of macrophages and/or monocytes.
Notes:
The ibidi Collagen Type I, rat tail has a very high viscosity due to the high level of native cross-links and the high protein concentration, especially at 10 mg/ml.
The viscosity of the undiluted collagen solution is very high. Handle the undiluted collagen with pipets for high viscosity solutions only. Among others, we recommend Eppendorf Visco Tips or Gilson Microman E.
Collagen solutions at high concentrations show thixotropic behavior. Shearing the solution will decrease the viscosity temporarily (=shear-thinning effect).
The viscosity of collagens from different suppliers might be lower due to their lower level of natural cross-linking.
Being a product of natural origin, the rate of gel formation, consistency, and clarity may vary between lots.
The collagen gelation is pH-driven. Temperature cannot cause gelation, but high temperatures (>37°C) and irradiation can cause protein denaturation.
The temperature during gelation influences several properties of the 3D gel. Agitation of the gel during formation, exposure to ultraviolet light, and temperature extremes can influence the integrity of the gel.
Thawing and Aliquoting
The viscosity of the undiluted collagen solution is very high. Handle the undiluted collagen with pipets for high viscosity solutions only. Among others, we recommend Eppendorf Visco Tips or Gilson Microman E.
Upon arrival, make sure the solution is completely thawed before aliquoting. Optionally, store the collagen solution at 4°C and aliquote within 48 hours.
- Remove the solution from the vial and transfer to a centrifuge tube. Use a pipet for high viscosity solutions. Do not mind air bubbles at this point.
- Mix well by pipetting the solution up and down. This ensures creating a homogeneous solution by shear-thinning. Do not vortex. Vortexing does not mix viscous solutions well. Do not mind air bubbles at this point.
- Spin down the centrifuge tube at 200 × g for 2 min to remove all air bubbles.
- Aliquot into one time use aliquotes using appropriate volumes. Optionally, dilute in 17.5 mM acetic acid before aliquoting. Mix well.
- Freeze aliquots or diluted solutions immediately
Notes:
Do not use partially thawed solutions.
Do not thaw and refreeze multiple times.
Collagen is insoluble at a neutral pH. It can be diluted in 17.5 mM acetic
acid.
Specific 3D Gel Protocols for DMEM and RPMI 1640
Step-by-step protocols for creating gels using either Dulbecco’s Modified Eagle Medium (DMEM) or Roswell Park Memorial Institute (RPMI 1640) cell culture medium can be found in:
Application Note 26: ”Preparation of Collagen I Gels”
General 3D Gel Protocol
Use these recommendations as guidelines to elaborate the optimal gelation protocol for your culture system.
Notes:
The salt concentration in the final gel mix needs to be 1×.
The final pH needs to be 7.2–7.4.
If supplements (e.g., growth factors, inhibitors, sera, L–glutamine, etc.) are added, make sure the final concentration is 1×.
Always add the cell suspension after pH adjustment.
-
Place the following on ice:
• Sterile ddH2O
• Sterile 1M NaOH
• 10× medium (or 10× buffer)
• 1× medium (or 1× buffer)
• Additional buffers (e.g. NaHCO3)
• Collagen solution (diluted to 4.0 mg/ml) -
Calculate the volume of collagen solution to be used:
-
Calculate the volume of the 10× medium to be used:
-
Place a sterile tube, of sufficient capacity, on ice.
-
. Perform these steps, in the following order, under sterile conditions:
Note: On ice, the mixture containing the collagen can be used for a maximum of 5 minutes before partial gelation occurs.
(a) Pipet the 10× medium into the tube.
(b) Add sterile, ice-cold 1M NaOH to the 10× medium to adjust the pH to an alkaline milieu. The exact volume is determined by measuring the pH of the final gel mixture (after step 5g).
(c) Optionally, add additional buffers (e.g. NaHCO3) if not contained in the 10× medium.
(d) Add ddH2O to match the 2/3 of the final gel volume.
(e) Supplement the mixture with 1× medium (1/3 of the final volume). If addition of cells is desired, only add half of this volume here. Add the cell suspension after step 5g.
(f) Dilute the collagen to 4.0 mg/ml in 17.5 mM acetic acid. Check the Certificate of Analysis (CoA) for the lot-specific collagen concentration. Mix well.
(g) Add Collagen I to the tube. Mix the contents of the tube thoroughly and place on ice.
(h) If desired, add a cell suspension to the mixture.
(i) Mix the contents of the tube thoroughly and place on ice.
(j) The mixture is now ready to be pipetted into the cell culture vessel of choice for 5 minutes. Keep on ice during pipetting.
(k) For gelation, place the mixture in a cell culture incubator (37°C, 5% CO2) for 30 minutes.
Notes:
For the addition of supplements (e.g., growth factors, inhibitors, sera, L–glutamine, etc.), add the supplements to the 1× medium without cells.
Keep in mind that the concentration of the cell suspension is diluted, when added to the mixture.
Final cell concentrations ranging from 1 to 20 × 106 cells/ml are recommended.
A collagen gel is no longer pipettable because the structure will be damaged by the pipet tip and the suction force.
Thin Coating Procedure
We recommend using Collagen I as a thin coating at 5 µg/cm2 . Please use this only as a guideline value. Optimization of the desired protein concentration might be required. Also, further dilution may be desired, depending on the cell system. For a complete coating protocol for ibidi products see our Application Note 08: ”Coating Protocols for ibidi Labware”.
Preparing Acetic Acid Solution
The rat tail collagen is dissolved in 17.5 mM acetic acid (∼ 0.1%). To prepare this solution, use the following procedure:
- Use 17.5 M stock solution of acetic acid (e.g. A6283, Sigma–Aldrich).
- Prepare sterile, double distilled water (ddH2O) for cell culture.
- Dilute the acetic acid stock solution 1:1000 in ddH2O.
Coating Protocol
-
Determine the volume of the dish or channel to be coated.
-
Determine the coating area Acoating (i.e., the complete area that comes in contact with fluids).
-
Calculate the required collagen concentration:
-
Dilute collagen to the calculated concentration, using 17.5 mM acetic acid. Collagen is insoluble at neutral pH.
-
Fill the dish or channel.
-
Incubate at room temperature for one hour.
-
Fully aspirate the channel or well volume.
-
Carefully rinse with PBS or serum-free medium.
-
Wells or channels are now ready for use. Optionally, air-dry them at room temperature.
-
Store under sterile conditions and use as soon as possible.
Examples
The table below shows some examples, which concentration of Collagen I is necessary to coat the surface with 5 µg/cm2 . In case of the multi-well plates, please use the following concentration as guideline values only.
Please keep in mind that all cell culture devices are coated on the entire surface that is wetted by the liquid (coating area). That includes the growth area, the side walls and, in case of channels, the channel’s ceiling.
| [cm2 ] Growth area per well| [cm2 ] Coating area per well| [ml] Volume|
[µg/ml] Collagen Concentration
---|---|---|---|---
ibidi µ-Slide 8 Well| 1.1| 2.2| 0.3| 35
ibidi µ-Slide VI 0.4| 0.6| 1.2| 0.03| 200
6 well plate| 10.0| 12.0| 4.0| 15
12 well plate| 3.5| 5.0| 1.5| 17
24 well plate| 1.9| 4.3| 1.0| 25
48 well plate| 1.0| 4.0| 0.8| 25
96 well plate| 0.55| 2.4| 0.3| 35
384 well plate| 0.11| 0.8| 0.05| 80
Culture Flask 75 cm2| 75.0| 85.0| 10.0| 42
Ordering Information
ibidi provides Collagen Type I from rat tail and from bovine origin.
| Cat. No. | Description |
|---|---|
| 50201 | Collagen Type I, rat tail, 5 mg/ml, 1 × 5 ml: non–pepsinized |
| 50202 | Collagen Type I, rat tail, 5 mg/ml, 4 × 5 ml: non–pepsinized |
| 50203 | Collagen Type I, rat tail, 5 mg/ml, 1 × 100 ml: non–pepsinized |
| 50204 | Collagen Type I, rat tail, 10 mg/ml, 1 × 5 ml: non–pepsinized |
| 50205 | Collagen Type I, rat tail, 10 mg/ml, 4 × 5 ml: non–pepsinized |
| 50206 | Collagen Type I, rat tail, 10 mg/ml, 1 × 100 ml: non–pepsinized |
| 50301 | Collagen Type I, bovine, 5 mg/ml, 1 × 5 ml: non–pepsinized |
| 50302 | Collagen Type I, bovine, 5 mg/ml, 4 × 5 ml: non–pepsinized |
| 50303 | Collagen Type I, bovine, 5 mg/ml, 1 × 100 ml: non–pepsinized |
Customers Support
For research use only!
Further information can be found at ibidi.com. For
questions and suggestions please contact us by e-mail
[email protected] or by telephone
+49 (0)89/520 4617 0.
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